Yong Zhang
Association:
University of Chicago, Ecology and Evolution
Research Interests:
- Analysis of gene lost and gain with comparative genomics
- Evolutionary analysis of natural antisense transcripts
- Development of bioinformatic databases and web services
Publications: (*: Equal contribution)
1. Li, J., Zhang, Y., Kong, L., and Wei, L. Long trans-Natural Sense/Antisense Pairs Including Non-Coding RNAs in Ten Genomes and Implications for Gene Regulation. Submitted.
2. Kong, L., Zhang, Y., Ye, Z., Wei, L. and Gao, G. (2007) CPC: assess transcript protein-coding potential by sequence features. Nucleic Acids Res., 35, W345–W349. pdf
3. Zhang, Y., Li, J., Kong, L., Gao, G., Liu, Q.R. and Wei, L. (2007) NATsDB: Natural Antisense Transcripts DataBase. Nucleic Acids Res., 35, D156-161. pdf
4. Zhang, W.*, Zhang, Y.*, Zheng, H.*, Zhang, C., Xiong, W., Olyarchuk, J.G., Walker, M., Xu, W., Zhao, M., Zhao, S. et al. (2007) SynDB: a Synapse protein DataBase based on synapse ontology. Nucleic Acids Res., 35, D737-741. pdf
5. Zhang, Y., Liu, X.S., Liu, Q.R. and Wei, L. (2006) Genome-wide in silico identification and analysis of cis natural antisense transcripts (cis-NATs) in ten species. Nucleic Acids Res., 34, 3465-3475. pdf
6. Chen, Y.*, Zhang, Y.*, Yin, Y., Gao, G., Li, S., Jiang, Y., Gu, X. and Luo, J. (2005) SPD--a web-based secreted protein database. Nucleic Acids Res., 33, D169-173. pdf
7. Yin, Y.B., Zhang, Y., Yu, P., Luo, J.C., Jiang, Y. and Li, S.G. (2005) Comparative study of apoptosis-related gene loci in human, mouse and rat genomes. Acta Biochim Biophys Sin (Shanghai), 37, 341-348. pdf
8. Zhang, Y., Yin, Y., Chen, Y., Gao, G., Yu, P., Luo, J. and Jiang, Y. (2003) PCAS--a precomputed proteome annotation database resource. BMC Genomics, 4, 42. pdf
9. Ghen, X., Zhang, Y., Wang, J.M., Huang, Y., Luo, J.C., Wu, C.H. and Gu, X.C. (2003) GPCEG-A database for genomic polymorphism of Chinese ethnic groups. Acta genetica Sinica, 30, 509-514. pdf